Services & Resources / Wolfram Forums
-----
 /
MathGroup Archive
2001
*January
*February
*March
*April
*May
*June
*July
*August
*September
*October
*November
*December
*Archive Index
*Ask about this page
*Print this page
*Give us feedback
*Sign up for the Wolfram Insider

MathGroup Archive 2001

[Date Index] [Thread Index] [Author Index]

Search the Archive

RE: Appending to Lists

  • To: mathgroup at smc.vnet.net
  • Subject: [mg27118] RE: [mg27045] Appending to Lists
  • From: "Wolf, Hartmut" <Hartmut.Wolf at t-systems.de>
  • Date: Sun, 4 Feb 2001 02:58:53 -0500 (EST)
  • Sender: owner-wri-mathgroup at wolfram.com


-----Original Message-----
From: James Jones [mailto:j.k.jones at dl.ac.uk]
To: mathgroup at smc.vnet.net
Subject: [mg27118] [mg27045] Appending to Lists


Hi,

I have a function that creates a list (a) from another list (b). The list
elements are re-grouped in the new list according to a third list (c). A
Position command is applied to list (c) for an element, then with this
output the list (a) is created from list (b) at positions given by the
element position data, list (c). This is repeated for the large number of
elements in the original lists.
The Position command is necessary as different elements appear in the list a
different number of times.
However, with the large number of elements in the lists (approx 50,000 for a
simple list), this method is _very_ slow.
If any one can give me help in speeding this process up I would be very
grateful.

The data sets would look like this

      b                       c

    0.2                      1
    0.6                      2
    1.2                      3
    -0.2                     1
    0.5                       2
    0.3                       1
    0.7                       2
   -0.2                      1
   -0.6                      1

A List would then be created from this data ( the list (a) ) containing
vectors for 1, 2 and 3. The data in (b) is not important, and the order in
which elements in (c) drop out is not set.
In this case the (a) list should look like

a = { { 0.2, -0.2, -0.2, -0.6} , {0.6, 0.5, 0.7} , { 1.2 } }

My current function looks like this

Do[AppendTo[xfinal,
      Flatten[Part[X, #] & /@
          Position[Global`PARTICLE, i]]], {i, 1,
      Max[PARTICLE]}];

where xfinal is an (a) list, i.e. to be created.
          X is the (b) list , i.e. to be addressed, and
          PARTICLE is the (c) list. It is referenced by number.

and it is very slow!

Also, after producing this list, the different vector elements need to be
made the same length, and so 0.0 are added to the ends of all vector
elements shorter than the longest. My current function for doing this looks
like

table = Table[0.0, {Length[First[long]]}]; Print["Table Created!"];

Do[If[Length[Part[xfinal, i]] < Length[First[long]],
      AppendTo[Part[xfinal, i],
        Drop[table, (Length[Part[xfinal, i]])] ]], {i, 2,
      Length[xfinal]}];

where list (long) just sorts the list elements according to length.

This function is also very slow, and I was wondering, again, if anyone knew
a faster way of implementing this. Is the production of a table, once, and
then dropping bits off and appending the fastest method? Of course this
needs to be done tens of thousands of times per set of data so any small
speed increase would be very helpful ;->

Again, any help much appreciated,

James Jones
Daresbury Laboratory


Dear James,

deplorably, in my last reply I left out the timingd for the sort/split
version. Here are my more complete records:

Prog
In[1]:=
b = {0.2, 0.6, 1.2, -0.2, 0.5, 0.3, 0.7, -0.2, -0.6};
In[2]:=
c = {1, 2, 3, 1, 2, 1, 2, 1, 1};
 
In[3]:=
Position[c, 1]
Out[3]=
{{1}, {4}, {6}, {8}, {9}}
In[4]:=
Part[b, #] & /@ Position[c, 1]
Out[4]=
{{0.2}, {-0.2}, {0.3}, {-0.2}, {-0.6}}
In[5]:=
Flatten[Part[b, #] & /@ Position[c, 1]]
Out[5]=
{0.2, -0.2, 0.3, -0.2, -0.6}
In[6]:=
l = Flatten[Part[b, #] & /@ Position[c, #]] & /@ Range[3]
Out[6]=
{{0.2, -0.2, 0.3, -0.2, -0.6}, {0.6, 0.5, 0.7}, {1.2}}
In[7]:=
maxlen = Max @@ Length /@ l
Out[7]=
5
In[8]:=
PadRight[#, maxlen, 0.] & /@ l
Out[8]=
{{0.2, -0.2, 0.3, -0.2, -0.6}, {0.6, 0.5, 0.7, 0., 0.}, {1.2, 0., 0., 0.,
0.}}
In[9]:=
Transpose[{c, b}]
Out[9]=
{{1, 0.2}, {2, 0.6}, {3, 1.2}, {1, -0.2}, {2, 0.5}, {1, 0.3}, {2, 
    0.7}, {1, -0.2}, {1, -0.6}}
In[10]:=
Split[Sort@Transpose[{c, b}], First[#1] === First[#2] &]
Out[10]=
{{{1, -0.6}, {1, -0.2}, {1, -0.2}, {1, 0.2}, {1, 0.3}}, {{2, 0.5}, {2, 
      0.6}, {2, 0.7}}, {{3, 1.2}}}
In[11]:=
l = Map[Last, Split[Sort@Transpose[{c, b}], First[#1] === First[#2] &], {2}]
Out[11]=
{{-0.6, -0.2, -0.2, 0.2, 0.3}, {0.5, 0.6, 0.7}, {1.2}}
In[12]:=
PadRight[#, maxlen, 0.] & /@ l
Out[12]=
{{-0.6, -0.2, -0.2, 0.2, 0.3}, {0.5, 0.6, 0.7, 0., 0.}, {1.2, 0., 0., 0.,
0.}}
 
In[13]:=
t = Table[0.0, {Max @@ Length /@ l}]
Out[13]=
{0., 0., 0., 0., 0.}
In[14]:=
Join[#, Drop[t, Length[#]]] & /@ l
Out[14]=
{{-0.6, -0.2, -0.2, 0.2, 0.3}, {0.5, 0.6, 0.7, 0., 0.}, {1.2, 0., 0., 0.,
0.}}
 
In[16]:=
With[{t0 = Table[0. , {3}]}, ReplacePart[t0, #2, #1] & @@@ Transpose[{c,
b}]]//Transpose
Out[16]=
{{0.2, 0., 0., -0.2, 0., 0.3, 0., -0.2, -0.6}, {0., 0.6, 0., 0., 0.5, 0.,
0.7,
     0., 0.}, {0., 0., 1.2, 0., 0., 0., 0., 0., 0.}}
 

Tests:

Test of test:

In[18]:=
nWhat = 3; nEvents = 10;
In[19]:=
btest = Table[Random[Real, {-1, 1}], {nEvents}]
Out[19]=
{-0.691794, 0.813392, 0.396099, 0.164031, 0.61136, 0.839132, 0.646768, \
-0.976798, -0.31982, 0.526729}
In[20]:=
ctest = Table[Random[Integer, {1, nWhat}], {nEvents}]
Out[20]=
{1, 3, 2, 3, 2, 2, 3, 2, 1, 3}
In[21]:=
ltest = Flatten[Part[btest, #] & /@ Position[ctest, #]] & /@ Range[nWhat]
Out[21]=
{{-0.691794, -0.31982}, {0.396099, 0.61136, 0.839132, -0.976798}, {0.813392,

    0.164031, 0.646768, 0.526729}}
In[22]:=
With[{maxlen = Max @@ Length /@ ltest},
PadRight[#, maxlen, 0.] & /@ ltest]
Out[22]=
{{-0.691794, -0.31982, 0., 0.}, {0.396099, 0.61136, 
    0.839132, -0.976798}, {0.813392, 0.164031, 0.646768, 0.526729}}
In[23]:=
With[{ltest = 
      Flatten[Part[btest, #] & /@ Position[ctest, #]] & /@ Range[nWhat]},
  With[{maxlen = Max @@ Length /@ ltest}, PadRight[#, maxlen, 0.] & /@
ltest]]
Out[23]=
{{-0.691794, -0.31982, 0., 0.}, {0.396099, 0.61136, 
    0.839132, -0.976798}, {0.813392, 0.164031, 0.646768, 0.526729}}
In[24]:=
With[{ltest = 
      Map[Last, 
        Split[Sort@Transpose[{ctest, btest}], 
          First[#1] === First[#2] &], {2}]}, 
  With[{maxlen = Max @@ Length /@ ltest}, PadRight[#, maxlen, 0.] & /@
ltest]]
Out[24]=
{{-0.691794, -0.31982, 0., 0.}, {-0.976798, 0.396099, 0.61136, 
    0.839132}, {0.164031, 0.526729, 0.646768, 0.813392}}
In[25]:=
With[{t0 = Table[0., {nWhat}]}, 
    ReplacePart[t0, #2, #1] & @@@ Transpose[{ctest, btest}]] // Transpose
Out[25]=
{{-0.691794, 0., 0., 0., 0., 0., 0., 0., -0.31982, 0.}, {0., 0., 0.396099,
0.,
     0.61136, 0.839132, 0., -0.976798, 0., 0.}, {0., 0.813392, 0., 0.164031,

    0., 0., 0.646768, 0., 0., 0.526729}}


Test 3 Particles or Counters, 100,000 events:
In[26]:=
nWhat = 3; nEvents = 100000;
In[27]:=
btest = Table[Random[Real, {-1, 1}], {nEvents}];
In[28]:=
ctest = Table[Random[Integer, {1, nWhat}], {nEvents}];
In[29]:=
Timing[With[{ltest = 
          Flatten[Part[btest, #] & /@ Position[ctest, #]] & /@
Range[nWhat]}, 
      With[{maxlen = Max @@ Length /@ ltest}, 
        PadRight[#, maxlen, 0.] & /@ ltest]]][[1]]
Out[29]=
1.352 Second
In[30]:=
Timing[With[{ltest = 
          Map[Last, 
            Split[Sort@Transpose[{ctest, btest}], 
              First[#1] === First[#2] &], {2}]}, 
      With[{maxlen = Max @@ Length /@ ltest}, 
        PadRight[#, maxlen, 0.] & /@ ltest]]][[1]]
Out[30]=
5.207 Second
In[31]:=
Timing[With[{t0 = Table[0., {nWhat}]}, 
        ReplacePart[t0, #2, #1] & @@@ Transpose[{ctest, btest}]] // 
      Transpose][[1]]
Out[31]=
2.383 Second


Test 30 Particles or Counters, 100,000 events:
In[32]:=
nWhat = 30; nEvents = 100000;
In[33]:=
btest = Table[Random[Real, {-1, 1}], {nEvents}];
In[34]:=
ctest = Table[Random[Integer, {1, nWhat}], {nEvents}];
In[35]:=
Timing[With[{ltest = 
          Flatten[Part[btest, #] & /@ Position[ctest, #]] & /@
Range[nWhat]}, 
      With[{maxlen = Max @@ Length /@ ltest}, 
        PadRight[#, maxlen, 0.] & /@ ltest]]][[1]]
Out[35]=
3.585 Second
In[36]:=
Timing[With[{ltest = 
          Map[Last, 
            Split[Sort@Transpose[{ctest, btest}], 
              First[#1] === First[#2] &], {2}]}, 
      With[{maxlen = Max @@ Length /@ ltest}, 
        PadRight[#, maxlen, 0.] & /@ ltest]]][[1]]
Out[36]=
5.418 Second
In[37]:=
Timing[With[{t0 = Table[0., {nWhat}]}, 
        ReplacePart[t0, #2, #1] & @@@ Transpose[{ctest, btest}]] // 
      Transpose][[1]]
Out[37]=
4.346 Second


Test 300 Particles or Counters, 30,000 events:
In[38]:=
nWhat = 300; nEvents = 30000;
In[39]:=
btest = Table[Random[Real, {-1, 1}], {nEvents}];
In[40]:=
ctest = Table[Random[Integer, {1, nWhat}], {nEvents}];
In[41]:=
Timing[With[{ltest = 
          Flatten[Part[btest, #] & /@ Position[ctest, #]] & /@
Range[nWhat]}, 
      With[{maxlen = Max @@ Length /@ ltest}, 
        PadRight[#, maxlen, 0.] & /@ ltest]]][[1]]
Out[41]=
9.534 Second
In[42]:=
Timing[With[{ltest = 
          Map[Last, 
            Split[Sort@Transpose[{ctest, btest}], 
              First[#1] === First[#2] &], {2}]}, 
      With[{maxlen = Max @@ Length /@ ltest}, 
        PadRight[#, maxlen, 0.] & /@ ltest]]][[1]]
Out[42]=
1.582 Second
In[43]:=
Timing[With[{t0 = Table[0., {nWhat}]}, 
        ReplacePart[t0, #2, #1] & @@@ Transpose[{ctest, btest}]] // 
      Transpose][[1]]
Out[43]=
3.866 Second


Test 1000 Particles or Counters, 10,000 events:
In[44]:=
nWhat = 1000; nEvents = 10000;
In[45]:=
btest = Table[Random[Real, {-1, 1}], {nEvents}];
In[46]:=
ctest = Table[Random[Integer, {1, nWhat}], {nEvents}];
In[47]:=
Timing[With[{ltest = 
          Flatten[Part[btest, #] & /@ Position[ctest, #]] & /@
Range[nWhat]}, 
      With[{maxlen = Max @@ Length /@ ltest}, 
        PadRight[#, maxlen, 0.] & /@ ltest]]][[1]]
Out[47]=
15.853 Second
In[48]:=
Timing[With[{ltest = 
          Map[Last, 
            Split[Sort@Transpose[{ctest, btest}], 
              First[#1] === First[#2] &], {2}]}, 
      With[{maxlen = Max @@ Length /@ ltest}, 
        PadRight[#, maxlen, 0.] & /@ ltest]]][[1]]
Out[48]=
0.581 Second
In[49]:=
Timing[With[{t0 = Table[0., {nWhat}]}, 
        ReplacePart[t0, #2, #1] & @@@ Transpose[{ctest, btest}]] // 
      Transpose][[1]]
Out[49]=
4.887 Second

So we see that the sort/split version is unaffected by the no of particles
(or counters?) but is not the best in any circumstances.

-- Hartmut Wolf



  • Prev by Date: AW: Appending to Lists
  • Next by Date: MATHEMATICA PROGRAM
  • Previous by thread: Re: Appending to Lists
  • Next by thread: Re: Problem with the GaussianQuadratureWeights[n, a, b]