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Re: changing style of vertices for ShowGraph with Combinatorica
*To*: mathgroup at smc.vnet.net
*Subject*: [mg86348] Re: [mg86332] changing style of vertices for ShowGraph with Combinatorica
*From*: Murray Eisenberg <murray at math.umass.edu>
*Date*: Sun, 9 Mar 2008 05:01:07 -0500 (EST)
*Organization*: Mathematics & Statistics, Univ. of Mass./Amherst
*References*: <200803070729.CAA19892@smc.vnet.net> <C63D1D41-0058-431D-A84D-4418E66DBF46@lse.ac.uk> <200803081044.FAA13587@smc.vnet.net> <C5476BB7-775D-44D1-8046-346E75B094A0@lse.ac.uk>
*Reply-to*: murray at math.umass.edu
The first example profered shows precisely part of the difficulty: No
edges are labeled!
J. McKenzie Alexander wrote:
> Setting the option VertexLabeling->True has no effect when a custom
> definition is provided for VertexRenderingFunction, as VertexLabeling
> only affects how the default rendering function draws the vertices. If
> you want vertex labels provided you need to include that in the
> definition of the custom rendering function.
>
> Look up the documentation for VertexRenderingFunction and
> EdgeRenderingFunction to see what additional arguments are provided. The
> first argument for VertexRenderingFunction is the position of the
> vertex. The second argument is the label. So the following works:
>
> GraphPlot[Cycle[3], Method -> Automatic, VertexLabeling -> True,
> EdgeLabeling -> True, EdgeRenderingFunction -> ({Black, Line[#1]} &),
> VertexRenderingFunction -> ({EdgeForm[{Thickness[0.005], Red}], Yellow,
> Disk[#1, 0.04], Black, Text[#2, #1]} &)]
>
> You can drop the option settings for VertexLabeling and EdgeLabeling and
> get the same effect.
>
> As for whether GraphPlot plays well with the Combinatorica graph
> structure, it does handle vertex labels correctly but not edge labels,
> as the following example illustrates. I was personally surprised to
> find that the edge labels were not passed to EdgeRenderingFunction. I
> think this might be a bug.
>
> GraphPlot[
> Graph[{{{1, 2}, EdgeLabel -> "e1"}, {{2, 3}, EdgeLabel -> "e2"}, {{3, 1},
> EdgeLabel -> "e3"}},
> {{{-0.5, 0.866}, VertexLabel -> "a"},
> {{-0.5, -0.866}, VertexLabel -> "b"},
> {{1., 0}, VertexLabel -> "c"}}],
> EdgeRenderingFunction -> ({Black, Line[#1],
> Text[#3, Mean[#1]]
> } &),
> VertexRenderingFunction -> ({EdgeForm[{Thickness[0.005], Red}], Yellow,
> Disk[#1, 0.04], Black, Text[#2, #1]} &)]
>
> Cheers,
>
> Jason
>
> On 8 Mar 2008, at 10:44, Murray Eisenberg wrote:
>
>> Yes, GraphPlot seems to permit making nice vertices (or edges), but then
>> the labeling -- either with a Graph object from Combinatorica or just
>> the kind of graph described by the GraphPlot reference page -- does not
>> seem to admit vertex labels or edge labels, at least so far as I can
>> see. For example, neither of the following displays either vertex
>> labels or edge labels:
>>
>>
>> GraphPlot[Cycle[3], Method -> Automatic, VertexLabeling -> True,
>> EdgeLabeling -> True, EdgeRenderingFunction -> ({Black, Line[#1]} &),
>> VertexRenderingFunction -> ({EdgeForm[{Thickness[0.005], Red}],
>> Yellow, Disk[#1, 0.04]} &)]
>>
>> GraphPlot[{{v1 -> v2, "a"}, {v2 -> v3, "b"}, {v3 -> v1, "c"}},
>> Method -> Automatic, VertexLabeling -> True, EdgeLabeling -> True,
>> EdgeRenderingFunction -> ({Black, Line[#1]} &),
>> VertexRenderingFunction -> ({EdgeForm[{Thickness[0.005], Red}],
>> Yellow, Disk[#1, 0.04]} &)]
>>
>> On the other hand, if I remove he VertexRenderingFunction option, I do
>> see vertex labels on the default (yellow boxes) vertex shapes:
>>
>> GraphPlot[{v1 -> v2, "a"}, {v2 -> v3, "b"}, {v3 -> v1, "c"}},
>> Method -> Automatic, VertexLabeling -> True,
>> EdgeLabeling -> True, EdgeRenderingFunction -> ({Black, Line[#1]} &)]
>>
>> GraphPlot[Cycle[3], Method -> Automatic, VertexLabeling -> True,
>> EdgeLabeling -> True, EdgeRenderingFunction -> ({Black, Line[#1]} &)]
>>
>> Of course this now defeats the purpose of using GraphPlot so as to get
>> exactly the kind of vertex shapes that VertexRenderingFunction, above,
>> provides.
>>
>> Similarly with EdgeRenderingFunction.
>>
>> The kernel function GraphPlot doesn't seem to mesh very well with
>> Combinatorica's graph functions. This all still seems only "half-baked".
>>
>>
>> J. McKenzie Alexander wrote:
>>> Take a look at GraphPlot, the graph rendering function that is built
>>> into the Mathematica kernel. I switched from using ShowGraph to
>>> GraphPlot after realising that it was (a) faster and (b) easier to
>>> customise. Here's what you want:
>>>
>>> GraphPlot[
>>> Cycle[3],
>>> Method -> None,
>>> EdgeRenderingFunction -> ({Black, Line[#1]} &),
>>> VertexRenderingFunction -> ({EdgeForm[{Thickness[0.005], Red}], Yellow,
>>> Disk[#1, 0.04]} &)
>>> ]
>>>
>>> You need to specify Method->None, otherwise GraphPlot will override the
>>> specified positions of the vertices in the graph and use its own default
>>> vertex positioning algorithm.
>>>
>>> VertexRenderingFunction is what you need to define in order to customise
>>> the appearance of the vertices.
>>>
>>> I provided a definition of EdgeRenderingFunction just so that the edges
>>> are rendered in the same way as ShowGraph.
>>>
>>> Cheers,
>>>
>>> Jason
>>>
>>> --
>>> J. McKenzie Alexander
>>> Department of Philosophy, Logic and Scientific Method
>>> London School of Economics and Political Science
>>> Houghton Street, London WC2A 2AE
>>>
>>>
>>> On 7 Mar 2008, at 07:29, Murray Eisenberg wrote:
>>>
>>>> With Mathematica 6, I can change the default style (medium black disk)
>>>> for rendering the vertices of a Combinatorica Graph like this:
>>>>
>>>> Needs["Combinatorica`"]
>>>>
>>>> g = Cycle[3];
>>>> ShowGraph[g, VertexStyle -> Disk[Large], VertexColor -> Red]
>>>>
>>>> But how can I, for example, change the vertex style so it is, say, a
>>>> large yellow disk with a thick red boundary? Or even just change it to
>>>> be a circle? I tried "obvious" things like the following, but they
>>>> cause errors:
>>>>
>>>> ShowGraph[g, VertexStyle -> Graphics[Circle[], ImageSize -> 20]]
>>>>
>>>> --
>>>> Murray Eisenberg murray at math.umass.edu
>>>> Mathematics & Statistics Dept.
>>>> Lederle Graduate Research Tower phone 413 549-1020 (H)
>>>> University of Massachusetts 413 545-2859 (W)
>>>> 710 North Pleasant Street fax 413 545-1801
>>>> Amherst, MA 01003-9305
>>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> Please access the attached hyperlink for an important electronic
>>> communications disclaimer:
>>> http://www.lse.ac.uk/collections/secretariat/legal/disclaimer.htm
>>>
>>
>> --
>> Murray Eisenberg murray at math.umass.edu
>> Mathematics & Statistics Dept.
>> Lederle Graduate Research Tower phone 413 549-1020 (H)
>> University of Massachusetts 413 545-2859 (W)
>> 710 North Pleasant Street fax 413 545-1801
>> Amherst, MA 01003-9305
>>
>
> --
> Dr J. McKenzie Alexander
> Department of Philosophy, Logic and Scientific Method
> London School of Economics and Political Science
> Houghton Street, London WC2A 2AE
>
>
>
>
> Please access the attached hyperlink for an important electronic
> communications disclaimer:
> http://www.lse.ac.uk/collections/secretariat/legal/disclaimer.htm
>
--
Murray Eisenberg murray at math.umass.edu
Mathematics & Statistics Dept.
Lederle Graduate Research Tower phone 413 549-1020 (H)
University of Massachusetts 413 545-2859 (W)
710 North Pleasant Street fax 413 545-1801
Amherst, MA 01003-9305
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