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Re: Export

  • To: mathgroup at smc.vnet.net
  • Subject: [mg110263] Re: Export
  • From: David Bailey <dave at removedbailey.co.uk>
  • Date: Thu, 10 Jun 2010 08:11:10 -0400 (EDT)
  • References: <huntgi$bph$1@smc.vnet.net>

On 09/06/10 12:21, Clint wrote:
> Hi Bill,
>
> Thank you for youre response. I just read this post and in the meantime I found this work around:
>
> read a file and skip so many records down.. (here i skip so many iterations...)
>
> strm = OpenRead[ToFileName[{NotebookDirectory[]}, "1laserGrid.txt"]];
> If[iter != 1, Skip[strm, Record, (iter - 1)*Nz]];
> EL = ReadList[strm, Expression];
> Close[strm];
>
> append to a file
> strm = OpenAppend[ToFileName[{NotebookDirectory[]}, "1laserGrid.txt"],
>      FormatType ->  OutputForm];
> WriteString[strm,
>    "\n"<>  StringDrop[
>      StringDrop[
>       StringReplace[ToString[ELNewNew, InputForm], "," ->  "\n"],
>       1], -1]];
> Close[strm];
>
> Both your solution and this one seem to give me the same problem which I will describe below:
>
> The reason for using export and import is that I max out the 32 GB RAM on my PC. So to keep RAM down I use file I/O.
>
> While the "write" stream takes no time at all and doesn't depend on the current file size the read command gets bogged down as the file gets larger and larger... I naively thought that using "skip" in the read would prevent the processor from reading in the entire file which starts to take a very long time as the file sizes approch 100,000 KB's...
>
> This is making simulations virtually imposibble to run since they are taking 10 hours primarily because I keep looping through this read command everytime I propogate my PDE ...and each one is taking a minute or so...
>
> I'm at a loss on what to do here.....
>
> I have no choice but to use file I/O do to RAM limitations but i don't see a way around my problem there either :(
>
> One way I thought of was to maintain two data files.. "one where i store all my data" and the second one "where I just store the last 2 iterations of data since that is all I need to propogate my pde forward in time anyway".. However, I thought maybe I would not have to do that if I could use non-sequential data pulling from a file in Mathematica but I guess that isn't possible?
>
The problem is that Skip can't just skip N records, because it doesn't 
'know' how long each record is without looking! The best answer is 
probably to perform binary I/O which will let you write records of a 
fixed number of bytes, and then use SetStreamPosition to move directly 
to the point of interest. Real's for example take 8 bytes (when written 
in binary). I am assuming you are working at machine precision.

I am also not clear why you are using ReadList, because that will read 
the rest of your file into store - which is not what you want, I presume.

What you want to do certainly sounds do-able!

David Bailey

www.dbaileyconsultancy.co.uk


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